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Cytoscape 3.5.0 Cytoscape 3.5.0





A guide to uninstall Cytoscape 3.5.0 from your computer

This page contains detailed information on how to uninstall Cytoscape 3.5.0 for Windows. It was created for Windows by Cytoscape Consortium. Check out here for more details on Cytoscape Consortium. Click on to get more data about Cytoscape 3.5.0 on Cytoscape Consortium's website. The program is frequently found in the C:\Program Files\Cytoscape_v3.5.0 directory (same installation drive as Windows). The full command line for removing Cytoscape 3.5.0 is C:\Program Files\Cytoscape_v3.5.0\uninstall.exe. Note that if you will type this command in Start / Run Note you might get a notification for admin rights. The application's main executable file is named Cytoscape.exe and occupies 328.50 KB (336384 bytes).

The executable files below are part of Cytoscape 3.5.0. They take an average of 761.53 KB (779808 bytes) on disk.

  • Cytoscape.exe (328.50 KB)
  • uninstall.exe (355.00 KB)
  • i4jdel.exe (78.03 KB)


The information on this page is only about version 3.5.0 of Cytoscape 3.5.0. After the uninstall process, the application leaves some files behind on the computer. Part_A few of these are shown below.

Folders remaining:
  • C:\Program Files\Cytoscape_v3.5.0
  • C:\Users\%user%\AppData\Local\Packages\CanonicalGroupLimited.Ubuntu20.04onWindows_79rhkp1fndgsc\LocalState\rootfs\home\bioinfo\downloads\cytoscape-unix-3.5.0

Check for and remove the following files from your disk when you uninstall Cytoscape 3.5.0:
  • C:\Program Files\Cytoscape_v3.5.0\apps\biopax-3.3.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\command-dialog-3.3.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\core-apps-meta-3.4.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\cy-rest-3.3.8.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\datasource-biogrid-3.3.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\idmapper-3.5.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\json-3.4.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\network-analyzer-3.3.2.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\network-merge-3.3.4.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\opencl-cycl-3.5.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\opencl-layout-3.5.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\psi-mi-3.3.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\sbml-3.3.2.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\webservice-biomart-client-3.3.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\webservice-psicquic-client-3.3.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\apps\welcome-3.4.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\cytoscape.bat
  • C:\Program Files\Cytoscape_v3.5.0\Cytoscape.exe
  • C:\Program Files\Cytoscape_v3.5.0\cytoscape.sh
  • C:\Program Files\Cytoscape_v3.5.0\Cytoscape.vmoptions
  • C:\Program Files\Cytoscape_v3.5.0\framework\bin\karaf
  • C:\Program Files\Cytoscape_v3.5.0\framework\cytoscape_logo_512.png
  • C:\Program Files\Cytoscape_v3.5.0\framework\CytoscapeSplashScreen.png
  • C:\Program Files\Cytoscape_v3.5.0\framework\data\tmp\README
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\all.policy
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\config.properties
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\custom.properties
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\distribution.info
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\equinox-debug.properties
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\java.util.logging.properties
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\jmx.acl.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\jmx.acl.java.lang.Memory.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\jmx.acl.org.apache.karaf.bundle.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\jmx.acl.org.apache.karaf.config.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\jmx.acl.org.apache.karaf.security.jmx.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\jmx.acl.osgi.compendium.cm.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\jre.properties
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\keys.properties
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.command.acl.bundle.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.command.acl.config.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.command.acl.feature.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.command.acl.jaas.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.command.acl.kar.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.command.acl.scope_bundle.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.command.acl.shell.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.command.acl.system.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.features.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.features.obr.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.features.repos.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.jaas.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.kar.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.log.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.management.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.shell.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.apache.karaf.webconsole.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.ops4j.pax.logging.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\org.ops4j.pax.url.mvn.cfg
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\regions-config.xml
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\shell.init.script
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\startup.properties
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\system.properties
  • C:\Program Files\Cytoscape_v3.5.0\framework\etc\users.properties
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\bin\karaf-client.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\branding-3.5.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\endorsed\org.apache.karaf.exception-3.0.3.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\endorsed\org.apache.servicemix.specs.activation-api-1.1-2.4.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\endorsed\org.apache.servicemix.specs.jaxb-api-2.2-2.4.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\endorsed\org.apache.servicemix.specs.jaxp-api-1.4-2.4.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\endorsed\org.apache.servicemix.specs.jaxws-api-2.2-2.4.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\endorsed\org.apache.servicemix.specs.saaj-api-1.3-2.4.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\endorsed\org.apache.servicemix.specs.stax-api-1.2-2.4.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\endorsed\README
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\endorsed\xercesImpl-2.11.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\ext\README
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\karaf.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\karaf-jaas-boot.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\karaf-jmx-boot.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\karaf-launcher-3.5.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\karaf-org.osgi.core.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\org.apache.servicemix.specs.activator-2.4.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\org.apache.servicemix.specs.locator-2.4.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\lib\README
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\commons-io\commons-io\2.1\commons-io-2.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\cytoscape-temp\uk.ac.ebi.enfin.mi.cluster.micluster\1.6\uk.ac.ebi.enfin.mi.cluster.micluster-1.6.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\cytoscape-temp\y-layouts\3.0.5\y-layouts-3.0.5.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\javax\activation\com.springsource.javax.activation\1.1.1\com.springsource.javax.activation-1.1.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\javax\ws\rs\javax.ws.rs-api\2.0\javax.ws.rs-api-2.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\javax\xml\stream\com.springsource.javax.xml.stream\1.0.1\com.springsource.javax.xml.stream-1.0.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\jline\jline\2.12\jline-2.12.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\org\apache\aries\blueprint\org.apache.aries.blueprint.api\1.0.1\org.apache.aries.blueprint.api-1.0.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\org\apache\aries\blueprint\org.apache.aries.blueprint.cm\1.0.5\org.apache.aries.blueprint.cm-1.0.5.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\org\apache\aries\blueprint\org.apache.aries.blueprint.core.compatibility\1.0.0\org.apache.aries.blueprint.core.compatibility-1.0.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\org\apache\aries\blueprint\org.apache.aries.blueprint.core\1.4.2\org.apache.aries.blueprint.core-1.4.2.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\org\apache\aries\jmx\org.apache.aries.jmx.api\1.1.1\org.apache.aries.jmx.api-1.1.1.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\org\apache\aries\jmx\org.apache.aries.jmx.blueprint.api\1.1.0\org.apache.aries.jmx.blueprint.api-1.1.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\org\apache\aries\jmx\org.apache.aries.jmx.blueprint.core\1.1.0\org.apache.aries.jmx.blueprint.core-1.1.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\org\apache\aries\jmx\org.apache.aries.jmx.core\1.1.2\org.apache.aries.jmx.core-1.1.2.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\org\apache\aries\jmx\org.apache.aries.jmx.whiteboard\1.0.0\org.apache.aries.jmx.whiteboard-1.0.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\org\apache\aries\org.apache.aries.util\1.1.0\org.apache.aries.util-1.1.0.jar
  • C:\Program Files\Cytoscape_v3.5.0\framework\system\org\apache\aries\proxy\org.apache.aries.proxy.api\1.0.1\org.apache.aries.proxy.api-1.0.1.jar

Use regedit.exe to manually remove from the Windows Registry the keys below:
  • HKEY_CLASSES_ROOT\Cytoscape
  • HKEY_LOCAL_MACHINE\Software\Microsoft\Windows\CurrentVersion\Uninstall\5211-3645-3154-2580

Registry values that are not removed from your computer:
  • HKEY_CLASSES_ROOT\Local Settings\Software\Microsoft\Windows\Shell\MuiCache\C:\Program Files\Cytoscape_v3.5.0\uninstall.exe.ApplicationCompany
  • HKEY_CLASSES_ROOT\Local Settings\Software\Microsoft\Windows\Shell\MuiCache\C:\Program Files\Cytoscape_v3.5.0\uninstall.exe.FriendlyAppName
  • HKEY_LOCAL_MACHINE\System\CurrentControlSet\Services\bam\State\UserSettings\S-1-5-21-3478495250-1042852187-2371036533-1001\\Device\HarddiskVolume4\Program Files\Cytoscape_v3.5.0\Cytoscape.exe
  • HKEY_LOCAL_MACHINE\System\CurrentControlSet\Services\bam\State\UserSettings\S-1-5-21-3478495250-1042852187-2371036533-1001\\Device\HarddiskVolume4\Program Files\Cytoscape_v3.8.0\uninstall.exe
  • HKEY_LOCAL_MACHINE\System\CurrentControlSet\Services\bam\State\UserSettings\S-1-5-21-3478495250-1042852187-2371036533-1001\\Device\HarddiskVolume4\Users\UserName\Downloads\Cytoscape_3_5_0_windows_32bit.exe
  • HKEY_LOCAL_MACHINE\System\CurrentControlSet\Services\bam\State\UserSettings\S-1-5-21-3478495250-1042852187-2371036533-1001\\Device\HarddiskVolume4\Users\UserName\Downloads\Cytoscape_3_5_0_windows_64bit.exe


A way to uninstall Cytoscape 3.5.0 from your computer with Advanced Uninstaller PRO

Cytoscape 3.5.0 is a program offered by Cytoscape Consortium. Sometimes, computer users want to erase this application. Sometimes this is difficult because performing this manually requires some experience related to Windows program uninstallation. One of the best QUICK practice to erase Cytoscape 3.5.0 is to use Advanced Uninstaller PRO. Here is how to do this:





1. If you don't have Advanced Uninstaller PRO on your system, add it. This is a good step because Advanced Uninstaller PRO is an efficient uninstaller and general utility to optimize your PC.

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  • visit Download Link
  • download the setup by pressing the green DOWNLOAD button
  • set up Advanced Uninstaller PRO
2. Run Advanced Uninstaller PRO. It's recommended to take your time to get familiar with the program's interface and number of features available. Advanced Uninstaller PRO is a powerful system utility.

3. Press the General Tools category
Go to General Tools


4. Press the Uninstall Programs feature
Go to Uninstall Programs


5. All the applications existing on the PC will appear

6. Navigate the list of applications until you find Cytoscape 3.5.0 or simply click the Search field and type in "Cytoscape 3.5.0". The Cytoscape 3.5.0 program will be found very quickly. After you select Cytoscape 3.5.0 in the list of programs, some information about the program is shown to you:


  • Safety rating (in the left lower corner). The star rating tells you the opinion other people have about Cytoscape 3.5.0, from "Highly recommended" to "Very dangerous".
  • Opinions by other people - Press the Read reviews button.
  • Details about the application you are about to uninstall, by pressing the Properties button.
For example you can see that for Cytoscape 3.5.0:





  • The web site of the application is: http://www.cytoscape.org
  • The uninstall string is: C:\Program Files\Cytoscape_v3.5.0\uninstall.exe
7. Click the Uninstall button. A confirmation dialog will show up. Confirm the removal by clicking Uninstall. Advanced Uninstaller PRO will automatically remove Cytoscape 3.5.0.
Uninstall Cytoscape 3.5.0


8. After removing Cytoscape 3.5.0, Advanced Uninstaller PRO will ask you to run a cleanup. Press Next to start the cleanup. All the items of Cytoscape 3.5.0 which have been left behind will be found and you will be asked if you want to delete them. By removing Cytoscape 3.5.0 with Advanced Uninstaller PRO, you can be sure that no registry entries, files or directories are left behind on your system.

Your PC will remain clean, speedy and able to run without errors or problems.

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Disclaimer

The text above is not a piece of advice to uninstall Cytoscape 3.5.0 by Cytoscape Consortium from your computer, nor are we saying that Cytoscape 3.5.0 by Cytoscape Consortium is not a good application for your PC. This text only contains detailed info on how to uninstall Cytoscape 3.5.0 in case you decide this is what you want to do. Here you can find registry and disk entries that other software left behind and Advanced Uninstaller PRO discovered and classified as "leftovers" on other users' PCs.

2017-08-03 / Written by Daniel Statescu for Advanced Uninstaller PRO

follow @DanielStatescu
Last update on: 2017-08-03 06:38:51.223